SNP Profiles matching SPA 9 [COL]

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 Key

 1234567891011121314
_Input profile
CGATACGTACCCAGCTAAGGAGACCTGT
1._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
2._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
3._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
4._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
5._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
6._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
7._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
8._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
9._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
10._GC-01-121-6-18
CGATACGTACCCAGCTAAGGAGACCTGT
11._GC-01-121-6-18
CGATACGTACCCAGCTAAGGAGACCTGT
12._GC-01-121-6-18
CGATACGTACCCAGCTAAGGAGACCTGT
13._GC-01-121-6-18
CGATACGTACCCAGCTAAGGAGACCTGT
14._GC-01-121-6-18
CGATACGTACCCAGCTAAGGAGACCTGT
15._GC-08-167-4-10
CGATACGTACCCAGCTAAGGAGACCTGT
16._GC-08-167-4-10
CGATACGTACCCAGCTAAGGAGACCTGT
17._GC-08-167-4-10
CGATACGTACCCAGCTAAGGAGACCTGT
18._GC-08-167-4-10
CGATACGTACCCAGCTAAGGAGACCTGT
19._SPA_9_[COL]
CGATACGTACCCAGCTAAGGAGACCTGT
20._SPA_9_[COL]
CGATACGTACCCAGCTAAGGAGACCTGT
21._SPA_9_[COL]
CGATACGTACCCAGCTAAGGAGACCTGT
22._SPA_9_[COL]
CGATACGTACCCAGCTAAGGAGACCTGT
23._SPA_9_[COL]
CGATACGTACCCAGCTAAGGAGACCTGT
24._SPA_9_[COL]
CGATACGTACCCAGCTAAGGAGACCTGT
25._SPA_9_[COL]
CGATACGTACCCAGCTAAGGAGACCTGT
26._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
27._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
28._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
29._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
30._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
31._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
32._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
33._GC-01-099-5-16
CGATACGTACCCAGCTAAGGAGACCTGT
34._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
35._GC-01-121-6-18
CGATACGTACCCAGCTAAGGAGACCTGT
36._RUQ_235
CGATACGTACCCAGCTAAGGAGACCTGT
37._MO_20
CGATACGTACCCAGCTAAGGAGACCTGT
38._RUQ_233
__CCGTACCCAGCTAA_AGACCTGT
 1516171819202122232425262728
_Input profile
CGCCTTAAGGCGCTCTCGATCTAACTAG
1._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
2._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
3._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
4._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
5._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
6._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
7._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
8._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
9._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
10._GC-01-121-6-18
CGCCTTAAGGCGCTCTCGATCTAACTAG
11._GC-01-121-6-18
CGCCTTAAGGCGCTCTCGATCTAACTAG
12._GC-01-121-6-18
CGCCTTAAGGCGCTCTCGATCTAACTAG
13._GC-01-121-6-18
CGCCTTAAGGCGCTCTCGATCTAACTAG
14._GC-01-121-6-18
CGCCTTAAGGCGCTCTCGATCTAACTAG
15._GC-08-167-4-10
CGCCTTAAGGCGCTCTCGATCTAACTAG
16._GC-08-167-4-10
CGCCTTAAGGCGCTCTCGATCTAACTAG
17._GC-08-167-4-10
CGCCTTAAGGCGCTCTCGATCTAACTAG
18._GC-08-167-4-10
CGCCTTAAGGCGCTCTCGATCTAACTAG
19._SPA_9_[COL]
CGCCTTAAGGCGCTCTCGATCTAACTAG
20._SPA_9_[COL]
CGCCTTAAGGCGCTCTCGATCTAACTAG
21._SPA_9_[COL]
CGCCTTAAGGCGCTCTCGATCTAACTAG
22._SPA_9_[COL]
CGCCTTAAGGCGCTCTCGATCTAACTAG
23._SPA_9_[COL]
CGCCTTAAGGCGCTCTCGATCTAACTAG
24._SPA_9_[COL]
CGCCTTAAGGCGCTCTCGATCTAACTAG
25._SPA_9_[COL]
CGCCTTAAGGCGCTCTCGATCTAACTAG
26._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
27._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
28._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
29._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
30._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
31._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
32._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
33._GC-01-099-5-16
CGCCTTAAGGCGCTCTCGATCTAACTAG
34._MO_20
CGCCTT_GGCGCTCTCGATCTAACTAG
35._GC-01-121-6-18
CGCCTT_GGCGCTCTCGATCTAACTAG
36._RUQ_235
CGCCTTAAGGCGCTCTCGATCTAACTAG
37._MO_20
CGCCTTAAGGCGCTCTCGATCTAACTAG
38._RUQ_233
CGCCTT_GGCGTT____AACT_
 2930313233343536373839   
_Input profile
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
1._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
2._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
3._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
4._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
5._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
6._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
7._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
8._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
9._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
10._GC-01-121-6-18
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
11._GC-01-121-6-18
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
12._GC-01-121-6-18
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
13._GC-01-121-6-18
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
14._GC-01-121-6-18
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
15._GC-08-167-4-10
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
16._GC-08-167-4-10
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
17._GC-08-167-4-10
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
18._GC-08-167-4-10
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
19._SPA_9_[COL]
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
20._SPA_9_[COL]
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
21._SPA_9_[COL]
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
22._SPA_9_[COL]
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
23._SPA_9_[COL]
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
24._SPA_9_[COL]
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
25._SPA_9_[COL]
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
26._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
27._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
28._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
29._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
30._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
31._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
32._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
33._GC-01-099-5-16
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
34._MO_20
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
35._GC-01-121-6-18
AACTCTGTCTACCTTTCCAACTX_XX_XX_X
36._RUQ_235
AACTCTGTCTACCTTTCCAGCTX_XX_XX_X
37._MO_20
AATTCTGTCTACCTTTCCAACTX_XX_XX_X
38._RUQ_233
___GT___TTCCAA_X_XX_XX_X

Input profile: SPA_9_[COL]

 
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Mars Center for Cocoa Science, Brazil
Location: 1516 9 > FP
 Dapeng Zhang, 2016

1._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

2._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

3._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

4._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

5._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

6._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

7._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

8._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

9._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

12._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

13._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 3
 Dapeng Zhang, 2016

21._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 4
 Dapeng Zhang, 2016

22._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 5
 Dapeng Zhang, 2016

23._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 1 > FP
 Dapeng Zhang, 2016

24._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 14 > F
 Dapeng Zhang, 2016

25._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 6 > FP
 Dapeng Zhang, 2016

26._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

27._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

32._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

33._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

34._MO_20

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

35._MO_20 GC-01-121-6-18

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

36._SPA_9_[COL] RUQ_235

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

37._MO_20

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

38._RUQ_233 RUQ_233

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520